Software and Tools

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Websites

CoSyM

Online calculators of continuous symmetry, chirality and shape measures for small molecules and protein homomers.

Molecular Symmetry Online

Online set of tools for 3D interactive display of molecules and their symmetry elements.


Software

csm

Our main software that calculates continuous symmetry and chirality measures for molecules of all types, including proteins.

proteincsm

An earlier version of the csm software that calculates continuous symmetry measures for protein homomers.

pdb_prep

This software prepares protein files given in PDB format for calculation with proteincsm.

pdbslicer

This software applies different strategies of bisecting a protein into its building blocks, in order to analyze their structure.

Shape

This is the orginal Pinsky and Avnir code that calculates continuous shape measures (CShMs) for polyhedra.